Detailed information of SNP:



SNP ID: sf0225407022(Gbrowse)

Chromosome: chr02

Position: 25407022
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1412 71.60% 28.40%
All Indica795 55.72% 44.28%
All Japonica494 97.77% 2.23%
Aus67 61.19% 38.81%
Indica I373 61.39% 38.61%
Indica II211 53.55% 46.45%
Indica Intermediate211 47.87% 52.13%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica92 90.22% 9.78%
Japonica Intermediate67 98.51% 1.49%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 73.81% 26.19%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0225407022 C->T INTERGENIC None