Detailed information of SNP:
|
SNP ID:
sf0225407022(Gbrowse)
Chromosome: chr02 Position: 25407022 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 71.60% | 28.40% |
| All Indica | 795 | 55.72% | 44.28% |
| All Japonica | 494 | 97.77% | 2.23% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 373 | 61.39% | 38.61% |
| Indica II | 211 | 53.55% | 46.45% |
| Indica Intermediate | 211 | 47.87% | 52.13% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 90.22% | 9.78% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225407022 | C->T | INTERGENIC | None |