Detailed information of SNP:
|
SNP ID:
sf0225411350(Gbrowse)
Chromosome: chr02 Position: 25411350 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 62.00% | 38.00% |
| All Indica | 796 | 84.55% | 15.45% |
| All Japonica | 494 | 29.96% | 70.04% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 211 | 76.78% | 23.22% |
| Indica Intermediate | 210 | 73.33% | 26.67% |
| Temperate Japonica | 332 | 28.31% | 71.69% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225411350 | T->C | INTERGENIC | None |