Detailed information of SNP:
|
SNP ID:
sf0225418302(Gbrowse)
Chromosome: chr02 Position: 25418302 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 69.04% | 30.96% |
| All Indica | 798 | 64.54% | 35.46% |
| All Japonica | 497 | 71.23% | 28.77% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 49.07% | 50.93% |
| Indica II | 213 | 75.12% | 24.88% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 335 | 71.34% | 28.66% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225418302 | T->A | LOC_Os02g42280(LOC_Os02g42280.1) | Non-Synonymous SNP |