Detailed information of SNP:



SNP ID: sf0225423838(Gbrowse)

Chromosome: chr02

Position: 25423838
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 96.83% 3.17%
All Indica799 100.00% 0.00%
All Japonica497 93.36% 6.64%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 71.28% 28.72%
Japonica Intermediate68 91.18% 8.82%
Group VI/Aromatic14 35.71% 64.29%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0225423838 C->T INTERGENIC None