Detailed information of SNP:
|
SNP ID:
sf0225433835(Gbrowse)
Chromosome: chr02 Position: 25433835 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 72.62% | 27.38% |
| All Indica | 797 | 57.21% | 42.79% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 67.73% | 32.27% |
| Indica II | 213 | 49.30% | 50.70% |
| Indica Intermediate | 209 | 46.41% | 53.59% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225433835 | G->A | INTERGENIC | None |