Detailed information of SNP:
|
SNP ID:
sf0225435680(Gbrowse)
Chromosome: chr02 Position: 25435680 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 68.67% | 31.33% |
| All Indica | 797 | 50.56% | 49.44% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 374 | 53.48% | 46.52% |
| Indica II | 213 | 49.77% | 50.23% |
| Indica Intermediate | 210 | 46.19% | 53.81% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225435680 | C->T | INTERGENIC | None |