Detailed information of SNP:
|
SNP ID:
sf0225439020(Gbrowse)
Chromosome: chr02 Position: 25439020 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1304 | 89.42% | 10.58% |
| All Indica | 741 | 93.79% | 6.21% |
| All Japonica | 444 | 83.11% | 16.89% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 351 | 96.01% | 3.99% |
| Indica II | 195 | 89.23% | 10.77% |
| Indica Intermediate | 195 | 94.36% | 5.64% |
| Temperate Japonica | 298 | 93.29% | 6.71% |
| Tropical Japonica | 83 | 44.58% | 55.42% |
| Japonica Intermediate | 63 | 85.71% | 14.29% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 38 | 81.58% | 18.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225439020 | G->A | LOC_Os02g42310(LOC_Os02g42310.1) | INTRON |