Detailed information of SNP:
|
SNP ID:
sf0225440859(Gbrowse)
Chromosome: chr02 Position: 25440859 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 67.80% | 32.20% |
| All Indica | 797 | 49.31% | 50.69% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 374 | 52.41% | 47.59% |
| Indica II | 212 | 51.89% | 48.11% |
| Indica Intermediate | 211 | 41.23% | 58.77% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225440859 | G->A | LOC_Os02g42310(LOC_Os02g42310.1) | INTRON |