Detailed information of SNP:
|
SNP ID:
sf0225464294(Gbrowse)
Chromosome: chr02 Position: 25464294 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 54.73% | 45.27% |
| All Indica | 797 | 26.98% | 73.02% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 374 | 14.97% | 85.03% |
| Indica II | 213 | 52.11% | 47.89% |
| Indica Intermediate | 210 | 22.86% | 77.14% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225464294 | C->A | INTERGENIC | None |