Detailed information of SNP:
|
SNP ID:
sf0225470925(Gbrowse)
Chromosome: chr02 Position: 25470925 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1333 | 94.67% | 5.33% |
| All Indica | 761 | 91.20% | 8.80% |
| All Japonica | 454 | 99.34% | 0.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 91.21% | 8.79% |
| Indica II | 199 | 88.44% | 11.56% |
| Indica Intermediate | 198 | 93.94% | 6.06% |
| Temperate Japonica | 315 | 99.37% | 0.63% |
| Tropical Japonica | 74 | 98.65% | 1.35% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225470925 | G->A | INTERGENIC | None |