Detailed information of SNP:
|
SNP ID:
sf0225479823(Gbrowse)
Chromosome: chr02 Position: 25479823 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 56.10% | 43.90% |
| All Indica | 799 | 84.73% | 15.27% |
| All Japonica | 495 | 6.87% | 93.13% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 86.67% | 13.33% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 333 | 5.71% | 94.29% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225479823 | T->C | INTERGENIC | None |