Detailed information of SNP:
|
SNP ID:
sf0225508627(Gbrowse)
Chromosome: chr02 Position: 25508627 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 57.06% | 42.94% |
| All Indica | 798 | 89.72% | 10.28% |
| All Japonica | 497 | 8.05% | 91.95% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 73.58% | 26.42% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 7.76% | 92.24% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225508627 | G->A | INTERGENIC | None |