Detailed information of SNP:
|
SNP ID:
sf0225546116(Gbrowse)
Chromosome: chr02 Position: 25546116 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 64.81% | 35.19% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 496 | 8.47% | 91.53% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 8.38% | 91.62% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225546116 | C->T | INTERGENIC | None |