Detailed information of SNP:
|
SNP ID:
sf0225602081(Gbrowse)
Chromosome: chr02 Position: 25602081 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1388 | 56.84% | 43.16% |
| All Indica | 795 | 91.32% | 8.68% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 44 | 77.27% | 22.73% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 211 | 73.46% | 26.54% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 39 | 46.15% | 53.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225602081 | G->A | INTERGENIC | None |