Detailed information of SNP:
|
SNP ID:
sf0225609522(Gbrowse)
Chromosome: chr02 Position: 25609522 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 86.81% | 13.19% |
| All Indica | 798 | 83.33% | 16.67% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 84.00% | 16.00% |
| Indica II | 212 | 80.66% | 19.34% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225609522 | G->A | INTERGENIC | None |