Detailed information of SNP:
|
SNP ID:
sf0225781612(Gbrowse)
Chromosome: chr02 Position: 25781612 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 91.41% | 8.59% |
| All Indica | 768 | 85.16% | 14.84% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 355 | 72.96% | 27.04% |
| Indica II | 207 | 96.14% | 3.86% |
| Indica Intermediate | 206 | 95.15% | 4.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225781612 | C->T | INTERGENIC | None |