Detailed information of SNP:
|
SNP ID:
sf0225794413(Gbrowse)
Chromosome: chr02 Position: 25794413 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 86.88% | 13.12% |
| All Indica | 798 | 88.72% | 11.28% |
| All Japonica | 497 | 90.95% | 9.05% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 212 | 73.11% | 26.89% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 87.46% | 12.54% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225794413 | G->A | INTERGENIC | None |