Detailed information of SNP:
|
SNP ID:
sf0225818288(Gbrowse)
Chromosome: chr02 Position: 25818288 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 92.77% | 7.23% |
| All Indica | 792 | 92.80% | 7.20% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 38.46% | 61.54% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 206 | 75.73% | 24.27% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225818288 | C->T | INTERGENIC | None |