Detailed information of SNP:
|
SNP ID:
sf0225837430(Gbrowse)
Chromosome: chr02 Position: 25837430 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1268 | 94.32% | 5.68% |
| All Indica | 792 | 100.00% | 0.00% |
| All Japonica | 359 | 84.68% | 15.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 204 | 100.00% | 0.00% |
| Temperate Japonica | 257 | 90.27% | 9.73% |
| Tropical Japonica | 58 | 65.52% | 34.48% |
| Japonica Intermediate | 44 | 77.27% | 22.73% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 37 | 86.49% | 13.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225837430 | C->T | INTERGENIC | None |