Detailed information of SNP:
|
SNP ID:
sf0225841282(Gbrowse)
Chromosome: chr02 Position: 25841282 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 74.01% | 25.99% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 494 | 33.81% | 66.19% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 333 | 42.64% | 57.36% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225841282 | T->C | INTERGENIC | None |