Detailed information of SNP:
|
SNP ID:
sf0225858239(Gbrowse)
Chromosome: chr02 Position: 25858239 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 71.77% | 28.23% |
| All Indica | 797 | 58.22% | 41.78% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 75.47% | 24.53% |
| Indica II | 213 | 27.70% | 72.30% |
| Indica Intermediate | 209 | 58.37% | 41.63% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225858239 | G->T | INTERGENIC | None |