Detailed information of SNP:
|
SNP ID:
sf0225881993(Gbrowse)
Chromosome: chr02 Position: 25881993 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1275 | 93.41% | 6.59% |
| All Indica | 662 | 87.46% | 12.54% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 301 | 86.05% | 13.95% |
| Indica II | 182 | 89.01% | 10.99% |
| Indica Intermediate | 179 | 88.27% | 11.73% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225881993 | C->T | INTERGENIC | None |