Detailed information of SNP:
|
SNP ID:
sf0225957066(Gbrowse)
Chromosome: chr02 Position: 25957066 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 89.29% | 10.71% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 480 | 71.04% | 28.96% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 87.01% | 12.99% |
| Tropical Japonica | 89 | 22.47% | 77.53% |
| Japonica Intermediate | 60 | 55.00% | 45.00% |
| Group VI/Aromatic | 8 | 50.00% | 50.00% |
| Intermediate | 37 | 83.78% | 16.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225957066 | C->T | INTERGENIC | None |