Detailed information of SNP:
|
SNP ID:
sf0225959754(Gbrowse)
Chromosome: chr02 Position: 25959754 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 88.42% | 11.58% |
| All Indica | 790 | 87.22% | 12.78% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 13.85% | 86.15% |
| Indica I | 369 | 91.87% | 8.13% |
| Indica II | 212 | 75.47% | 24.53% |
| Indica Intermediate | 209 | 90.91% | 9.09% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225959754 | C->T | INTERGENIC | None |