Detailed information of SNP:
|
SNP ID:
sf0225975184(Gbrowse)
Chromosome: chr02 Position: 25975184 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 89.53% | 10.47% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 483 | 73.71% | 26.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 323 | 93.50% | 6.50% |
| Tropical Japonica | 92 | 20.65% | 79.35% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225975184 | G->A | INTERGENIC | None |