Detailed information of SNP:
|
SNP ID:
sf0225989602(Gbrowse)
Chromosome: chr02 Position: 25989602 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 54.58% | 45.42% |
| All Indica | 799 | 85.61% | 14.39% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225989602 | G->A | INTERGENIC | None |