Detailed information of SNP:



SNP ID: sf0225997286(Gbrowse)

Chromosome: chr02

Position: 25997286
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 91.47% 8.53%
All Indica799 85.23% 14.77%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I375 89.87% 10.13%
Indica II213 73.24% 26.76%
Indica Intermediate211 89.10% 10.90%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0225997286 G->A INTERGENIC None