Detailed information of SNP:
|
SNP ID:
sf0225999413(Gbrowse)
Chromosome: chr02 Position: 25999413 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 73.11% | 26.89% |
| All Indica | 798 | 98.75% | 1.25% |
| All Japonica | 470 | 25.11% | 74.89% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 324 | 12.65% | 87.35% |
| Tropical Japonica | 80 | 62.50% | 37.50% |
| Japonica Intermediate | 66 | 40.91% | 59.09% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 71.05% | 28.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225999413 | A->C | INTERGENIC | None |