Detailed information of SNP:
|
SNP ID:
sf0226008409(Gbrowse)
Chromosome: chr02 Position: 26008409 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 56.53% | 43.47% |
| All Indica | 797 | 88.71% | 11.29% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 212 | 74.06% | 25.94% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0226008409 | G->A | INTERGENIC | None |