Detailed information of SNP:
|
SNP ID:
sf0226008427(Gbrowse)
Chromosome: chr02 Position: 26008427 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1359 | 94.41% | 5.59% |
| All Indica | 758 | 95.91% | 4.09% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 49 | 14.29% | 85.71% |
| Indica I | 369 | 98.10% | 1.90% |
| Indica II | 191 | 91.10% | 8.90% |
| Indica Intermediate | 198 | 96.46% | 3.54% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0226008427 | A->G | INTERGENIC | None |