Detailed information of SNP:
|
SNP ID:
sf0226041929(Gbrowse)
Chromosome: chr02 Position: 26041929 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1266 | 83.25% | 16.75% |
| All Indica | 654 | 77.68% | 22.32% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 66 | 12.12% | 87.88% |
| Indica I | 314 | 94.90% | 5.10% |
| Indica II | 172 | 43.02% | 56.98% |
| Indica Intermediate | 168 | 80.95% | 19.05% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 81.58% | 18.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0226041929 | A->G | LOC_Os02g43230(LOC_Os02g43230.1) | Non-Synonymous SNP |