Detailed information of SNP:
|
SNP ID:
sf0226045765(Gbrowse)
Chromosome: chr02 Position: 26045765 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1195 | 88.03% | 11.97% |
| All Indica | 797 | 99.37% | 0.63% |
| All Japonica | 281 | 53.02% | 46.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 165 | 38.18% | 61.82% |
| Tropical Japonica | 70 | 77.14% | 22.86% |
| Japonica Intermediate | 46 | 69.57% | 30.43% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 37 | 83.78% | 16.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0226045765 | A->T | INTERGENIC | None |