Detailed information of SNP:
|
SNP ID:
sf0226055916(Gbrowse)
Chromosome: chr02 Position: 26055916 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1374 | 71.83% | 28.17% |
| All Indica | 754 | 59.15% | 40.85% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 347 | 77.81% | 22.19% |
| Indica II | 202 | 28.71% | 71.29% |
| Indica Intermediate | 205 | 57.56% | 42.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0226055916 | A->G | LOC_Os02g43260(LOC_Os02g43260.1) | Non-Synonymous SNP |