Detailed information of SNP:
|
SNP ID:
sf0226119641(Gbrowse)
Chromosome: chr02 Position: 26119641 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 94.40% | 5.60% |
| All Indica | 758 | 90.90% | 9.10% |
| All Japonica | 494 | 99.39% | 0.61% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 361 | 93.35% | 6.65% |
| Indica II | 204 | 92.16% | 7.84% |
| Indica Intermediate | 193 | 84.97% | 15.03% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 97.80% | 2.20% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0226119641 | C->T | INTERGENIC | None |