Detailed information of SNP:
|
SNP ID:
sf0226190643(Gbrowse)
Chromosome: chr02 Position: 26190643 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 64.94% | 35.06% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 490 | 8.16% | 91.84% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 331 | 7.25% | 92.75% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 65 | 12.31% | 87.69% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0226190643 | T->G | INTERGENIC | None |