Detailed information of SNP:
|
SNP ID:
sf0226264609(Gbrowse)
Chromosome: chr02 Position: 26264609 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 87.22% | 12.78% |
| All Indica | 790 | 87.59% | 12.41% |
| All Japonica | 497 | 94.16% | 5.84% |
| Aus | 66 | 22.73% | 77.27% |
| Indica I | 372 | 93.82% | 6.18% |
| Indica II | 212 | 76.42% | 23.58% |
| Indica Intermediate | 206 | 87.86% | 12.14% |
| Temperate Japonica | 335 | 91.94% | 8.06% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0226264609 | C->T | INTERGENIC | None |