Detailed information of SNP:
|
SNP ID:
sf0226397509(Gbrowse)
Chromosome: chr02 Position: 26397509 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 68.43% | 31.57% |
| All Indica | 799 | 46.93% | 53.07% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 22.67% | 77.33% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 211 | 60.19% | 39.81% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0226397509 | T->C | INTERGENIC | None |