Detailed information of SNP:
|
SNP ID:
sf0226484132(Gbrowse)
Chromosome: chr02 Position: 26484132 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 51.55% | 48.45% |
| All Indica | 798 | 21.30% | 78.70% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 13.07% | 86.93% |
| Indica II | 212 | 26.42% | 73.58% |
| Indica Intermediate | 211 | 30.81% | 69.19% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0226484132 | C->T | LOC_Os02g43860(LOC_Os02g43860.2) | Synonymous |
| sf0226484132 | C->T | LOC_Os02g43860(LOC_Os02g43860.1) | Synonymous |