Detailed information of SNP:
|
SNP ID:
sf0226510971(Gbrowse)
Chromosome: chr02 Position: 26510971 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 57.82% | 42.18% |
| All Indica | 797 | 92.35% | 7.65% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 92.51% | 7.49% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 52.63% | 47.37% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0226510971 | G->A | INTERGENIC | None |