Detailed information of SNP:
|
SNP ID:
sf0226537327(Gbrowse)
Chromosome: chr02 Position: 26537327 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 91.59% | 8.41% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 493 | 77.48% | 22.52% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 83.78% | 16.22% |
| Tropical Japonica | 93 | 70.97% | 29.03% |
| Japonica Intermediate | 67 | 55.22% | 44.78% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0226537327 | G->T | INTERGENIC | None |