Detailed information of SNP:
|
SNP ID:
sf0226582517(Gbrowse)
Chromosome: chr02 Position: 26582517 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 94.28% | 5.72% |
| All Indica | 798 | 93.98% | 6.02% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 66 | 65.15% | 34.85% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 79.72% | 20.28% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0226582517 | G->A | INTERGENIC | None |