Detailed information of SNP:
|
SNP ID:
sf0226605580(Gbrowse)
Chromosome: chr02 Position: 26605580 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 55.64% | 44.36% |
| All Indica | 799 | 91.74% | 8.26% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0226605580 | C->T | INTERGENIC | None |