Detailed information of SNP:
|
SNP ID:
sf0226671495(Gbrowse)
Chromosome: chr02 Position: 26671495 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1350 | 96.07% | 3.93% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 429 | 88.34% | 11.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 289 | 84.78% | 15.22% |
| Tropical Japonica | 84 | 98.81% | 1.19% |
| Japonica Intermediate | 56 | 91.07% | 8.93% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0226671495 | A->C | INTERGENIC | None |