Detailed information of SNP:
|
SNP ID:
sf0226701026(Gbrowse)
Chromosome: chr02 Position: 26701026 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 74.38% | 25.62% |
| All Indica | 797 | 89.96% | 10.04% |
| All Japonica | 491 | 49.29% | 50.71% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 373 | 94.64% | 5.36% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 332 | 53.31% | 46.69% |
| Tropical Japonica | 92 | 45.65% | 54.35% |
| Japonica Intermediate | 67 | 34.33% | 65.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0226701026 | A->G | INTERGENIC | None |