Detailed information of SNP:



SNP ID: sf0226707124(Gbrowse)

Chromosome: chr02

Position: 26707124
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1223 74.73% 25.27%
All Indica611 51.23% 48.77%
All Japonica497 98.99% 1.01%
Aus64 96.88% 3.12%
Indica I270 39.63% 60.37%
Indica II173 65.32% 34.68%
Indica Intermediate168 55.36% 44.64%
Temperate Japonica335 99.10% 0.90%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate37 89.19% 10.81%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0226707124 G->A LOC_Os02g44136(LOC_Os02g44136.1) INTRON