Detailed information of SNP:
|
SNP ID:
sf0226707124(Gbrowse)
Chromosome: chr02 Position: 26707124 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1223 | 74.73% | 25.27% |
| All Indica | 611 | 51.23% | 48.77% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 270 | 39.63% | 60.37% |
| Indica II | 173 | 65.32% | 34.68% |
| Indica Intermediate | 168 | 55.36% | 44.64% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 89.19% | 10.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0226707124 | G->A | LOC_Os02g44136(LOC_Os02g44136.1) | INTRON |