Detailed information of SNP:
|
SNP ID:
sf0226747747(Gbrowse)
Chromosome: chr02 Position: 26747747 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1370 | 58.61% | 41.39% |
| All Indica | 754 | 31.17% | 68.83% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 44.62% | 55.38% |
| Indica I | 353 | 30.88% | 69.12% |
| Indica II | 204 | 34.31% | 65.69% |
| Indica Intermediate | 197 | 28.43% | 71.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0226747747 | G->A | INTERGENIC | None |