Detailed information of SNP:
|
SNP ID:
sf0226785437(Gbrowse)
Chromosome: chr02 Position: 26785437 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 71.63% | 28.37% |
| All Indica | 798 | 90.10% | 9.90% |
| All Japonica | 497 | 40.64% | 59.36% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 75.12% | 24.88% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 335 | 44.78% | 55.22% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0226785437 | A->T | INTERGENIC | None |