Detailed information of SNP:
|
SNP ID:
sf0226802780(Gbrowse)
Chromosome: chr02 Position: 26802780 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 73.79% | 26.21% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 488 | 32.17% | 67.83% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 328 | 18.90% | 81.10% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 66 | 53.03% | 46.97% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 36 | 63.89% | 36.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0226802780 | T->C | INTERGENIC | None |