Detailed information of SNP:
|
SNP ID:
sf0226810730(Gbrowse)
Chromosome: chr02 Position: 26810730 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 51.89% | 48.11% |
| All Indica | 782 | 83.25% | 16.75% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 365 | 83.01% | 16.99% |
| Indica II | 210 | 82.38% | 17.62% |
| Indica Intermediate | 207 | 84.54% | 15.46% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0226810730 | T->C | INTERGENIC | None |