Detailed information of SNP:
|
SNP ID:
sf0226811321(Gbrowse)
Chromosome: chr02 Position: 26811321 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 95.10% | 4.90% |
| All Indica | 791 | 95.32% | 4.68% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 56.06% | 43.94% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 206 | 83.50% | 16.50% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0226811321 | C->T | INTERGENIC | None |